Journal: Biology

Article Title: Comparative Study of Bacillus -Based Plant Biofertilizers: A Proposed Index

doi: 10.3390/biology13090668

Figure Lengend Snippet: Strains used in this work and their role in this study.

Article Snippet: The type strains of Bacillus amyloliquefaciens D747, Bacillus amyloliquefaciens subsp. amyloliquefaciens Fukumoto DSM7, and Bacillus velezensis FZB42 were obtained from Deutsche Sammlung Von Mikroorganismen und Zellkulturen GmbH, Braunschweig, Germany.

Techniques: Staining, Negative Control

Journal: Biology

Article Title: Comparative Study of Bacillus -Based Plant Biofertilizers: A Proposed Index

doi: 10.3390/biology13090668

Figure Lengend Snippet: The 36 strains most closely related to the A6 isolate based on digital DNA–DNA hybridization, accession numbers, and intergenomic distances expressed as % similarity are shown.

Article Snippet: The type strains of Bacillus amyloliquefaciens D747, Bacillus amyloliquefaciens subsp. amyloliquefaciens Fukumoto DSM7, and Bacillus velezensis FZB42 were obtained from Deutsche Sammlung Von Mikroorganismen und Zellkulturen GmbH, Braunschweig, Germany.

Techniques: DNA-DNA Hybridization

Journal: Biology

Article Title: Comparative Study of Bacillus -Based Plant Biofertilizers: A Proposed Index

doi: 10.3390/biology13090668

Figure Lengend Snippet: Taxonomic comparison of the A6 isolate with closely related Bacillus strains. Neighbour-joining phylogenetic tree based on 16S rRNA sequence (GenBank acc. no. SAMN40153660) comparisons of isolate A6 and its 35 closest relatives. Strains DSM7, D747, and FZB42 were used as the outgroups. The numbers at bifurcations indicate how many times each species coincided in this position as a percentage, and only values > 50% are shown. Bar, 0.01 changes per nucleotide position.

Article Snippet: The type strains of Bacillus amyloliquefaciens D747, Bacillus amyloliquefaciens subsp. amyloliquefaciens Fukumoto DSM7, and Bacillus velezensis FZB42 were obtained from Deutsche Sammlung Von Mikroorganismen und Zellkulturen GmbH, Braunschweig, Germany.

Techniques: Comparison, Sequencing

Journal: Biology

Article Title: Comparative Study of Bacillus -Based Plant Biofertilizers: A Proposed Index

doi: 10.3390/biology13090668

Figure Lengend Snippet: Agricultural Protection Against Stress Index (APSI) tests on the OG Ba strains B. velezensis A6, B. amyloliquefaciens FZB42, B. amyloliquefaciens DSM7, and B. amyloliquefaciens subsp . plantarum D747. The maximum theoretical values are shown as well.

Article Snippet: The type strains of Bacillus amyloliquefaciens D747, Bacillus amyloliquefaciens subsp. amyloliquefaciens Fukumoto DSM7, and Bacillus velezensis FZB42 were obtained from Deutsche Sammlung Von Mikroorganismen und Zellkulturen GmbH, Braunschweig, Germany.

Techniques:

Journal: RSC Advances

Article Title: Biocementation of soil by calcite/aragonite precipitation using Pseudomonas azotoformans and Citrobacter freundii derived enzymes †

doi: 10.1039/c9ra02247c

Figure Lengend Snippet: X-ray diffraction (XRD) profile of precipitate formed after mixing the cell-free supernatant obtained from C. freundii (Y2b), Ps. azotoformans (C) and the reference strain Sp. pasteurii (DSM33), respectively, with cementation solution. The peaks related to calcite is marked with red triangle while that related to aragonite is marked with green squares.

Article Snippet: Sporosarsina pasteurii (DSM33) was obtained from DSMZ (Deutsche Sammlung von Mikroorganismen und Zellkulturen, Germany) and used as a reference strain.

Techniques:

Journal: RSC Advances

Article Title: Biocementation of soil by calcite/aragonite precipitation using Pseudomonas azotoformans and Citrobacter freundii derived enzymes †

doi: 10.1039/c9ra02247c

Figure Lengend Snippet: Optimum moisture content and dry density results of untreated sand and treated sand with three different bacterial growth supernatants, DSM33, Y2b and C

Article Snippet: Sporosarsina pasteurii (DSM33) was obtained from DSMZ (Deutsche Sammlung von Mikroorganismen und Zellkulturen, Germany) and used as a reference strain.

Techniques:

Journal: RSC Advances

Article Title: Biocementation of soil by calcite/aragonite precipitation using Pseudomonas azotoformans and Citrobacter freundii derived enzymes †

doi: 10.1039/c9ra02247c

Figure Lengend Snippet: Percentage California bearing ration (%CBR) values for the fine sand soil and after being treated with culture supernatant of C. freundii (Y2b), Ps. azotoformans (C) and the reference strain Sp. pasteurii (DSM33). The (*) indicates a significant difference from the typical sand soil as well as from other treatments ( P < 0.05).

Article Snippet: Sporosarsina pasteurii (DSM33) was obtained from DSMZ (Deutsche Sammlung von Mikroorganismen und Zellkulturen, Germany) and used as a reference strain.

Techniques:

Journal: RSC Advances

Article Title: Biocementation of soil by calcite/aragonite precipitation using Pseudomonas azotoformans and Citrobacter freundii derived enzymes †

doi: 10.1039/c9ra02247c

Figure Lengend Snippet: X-ray diffraction (XRD) profile of typical sand, and sandy soil treated with different urease-containing cell-free supernatant from C. freundii (Y2b), Ps. azotoformans (C) and the reference strain Sp. pasteurii (DSM33). The peaks related to calcite is marked with red triangle while that related to aragonite is marked with green squares. The peaks related to the untreated sand soil is marked with (*). The peaks of the treated soil that were increased in height is makred with (↑) while those that were absent in untreated sandy soil is marked with (⌘).

Article Snippet: Sporosarsina pasteurii (DSM33) was obtained from DSMZ (Deutsche Sammlung von Mikroorganismen und Zellkulturen, Germany) and used as a reference strain.

Techniques:

Journal: RSC Advances

Article Title: Biocementation of soil by calcite/aragonite precipitation using Pseudomonas azotoformans and Citrobacter freundii derived enzymes †

doi: 10.1039/c9ra02247c

Figure Lengend Snippet: Scanning electron micrographs (1 = 500× magnification, 2 = 1000× magnification) of typical sandy soil (A1 and A2), and sandy soil treated with DSM33 broth supernatant (B1 and B2), C supernatant (C1 and C2) and Y2b supernatant (D1 and D2). The scale bar length is 200 μm in A1–D1, and is 100 μm in A2–D2.

Article Snippet: Sporosarsina pasteurii (DSM33) was obtained from DSMZ (Deutsche Sammlung von Mikroorganismen und Zellkulturen, Germany) and used as a reference strain.

Techniques:

Journal: Microbial Cell Factories

Article Title: Non-sterilized fermentation of high optically pure d -lactic acid by a genetically modified thermophilic Bacillus coagulans strain

doi: 10.1186/s12934-017-0827-1

Figure Lengend Snippet: Strains and plasmids used in this study

Article Snippet: DSM1 , Wide type , DSMZ, Germany.

Techniques: Mutagenesis, Plasmid Preparation, Cloning, Preserving, Expressing

Journal: Microbial Cell Factories

Article Title: Non-sterilized fermentation of high optically pure d -lactic acid by a genetically modified thermophilic Bacillus coagulans strain

doi: 10.1186/s12934-017-0827-1

Figure Lengend Snippet: Insertion of LdldhD in the position of ldhL1 gene of B. coagulans ΔldhL1ΔldhL2. a The upstream and downstream regions of ldhL1 in the chromosome of B. coagulans ΔldhL1ΔldhL2; b The upstream and downstream regions of ldhL1 in the chromosome of B. coagulans d -DSM1

Article Snippet: DSM1 , Wide type , DSMZ, Germany.

Techniques:

Journal: Microbial Cell Factories

Article Title: Non-sterilized fermentation of high optically pure d -lactic acid by a genetically modified thermophilic Bacillus coagulans strain

doi: 10.1186/s12934-017-0827-1

Figure Lengend Snippet: Non-sterilized fed-batch fermentation of B. coagulans d -DSM1. Each data point represents the average of three replicates, with the error bars representing the standard deviation

Article Snippet: DSM1 , Wide type , DSMZ, Germany.

Techniques: Standard Deviation

Journal: Microbial Cell Factories

Article Title: Non-sterilized fermentation of high optically pure d -lactic acid by a genetically modified thermophilic Bacillus coagulans strain

doi: 10.1186/s12934-017-0827-1

Figure Lengend Snippet: Optical purity of d -lactic acid in non-sterilized fed-batch fermentation of B. coagulans d -DSM1. Each data point represents the average of three replicates, with the error bars representing the standard deviation

Article Snippet: DSM1 , Wide type , DSMZ, Germany.

Techniques: Standard Deviation

Journal: Food chemistry

Article Title: Solubilization of gliadins for use as a source of nitrogen in the selection of bacteria with gliadinase activity.

doi: 10.1016/j.foodchem.2014.07.085

Figure Lengend Snippet: Fig. 4. AHG-based zymogram. Extracellular proteins were extracted from cultures of selected bacterial strains and subjected to zymography. Since the gel contained AHG as a substrate, hydrolysis was monitored as the appearance of clear bands against the background after Coomassie staining. Numbers indicate the strain used as the potential source of extracellular gliadinase: 1–5, isolated Bacillus sp. strains from the fermented wheat sample; 6, Bacillus subtilis type strain 461; 7, Bacillus amyloliquefaciens type strain DSM7; 8, Escherichia coli CECT 423; 9, Lactococcus lactis subsp. lactis IL1403. Asterisks located on the left of each lane mark individual hydrolysis bands while vertical lines denote clearing areas where no individual bands can be clearly identified.

Article Snippet: The strains investigated were Enterococcus faecalis CECT 481, Enterococcus faecium CECT 410, Enterococcus durans CECT 411, Bifidobacterium bifidum CECT 4549, Bacillus subtilis CECT 461, Escherichia coli CECT 423, Enterobacter cloacae CECT 194, Citrobacter freundii CECT 401 and Lactobacillus brevis CECT 5354 from the Spanish Type Culture Collection (CECT, Valencia, Spain), Bacillus amyloliquefaciens DSM7 from the German Collection of Microorganisms and Cell Cultures (DSMZ, Braunschweig, Germany), and Lactobacillus casei BL23 (Mazé et al., 2010), Lactobacillus plantarum WCFS1 (Siezen et al., 2012), Lactococcus lactis subsp. lactis IL1403 (Bolotin et al., 2001), L. lactis subsp. cremoris MG1363 (Wegmann et al., 2007) and Streptococcus mitis B6 (Denapaite et al., 2010).

Techniques: Zymography, Staining, Isolation

Journal: iScience

Article Title: The gut microbiota instructs the hepatic endothelial cell transcriptome

doi: 10.1016/j.isci.2021.103092

Figure Lengend Snippet:

Article Snippet: Bacteroides thetaiotaomicron , DSMZ-German Collection of Microorganisms and cell cultures GmbH , Cat#: DSM2079.

Techniques: Recombinant, Modification, SYBR Green Assay, Blocking Assay, RNA HS Assay, Expressing, Software

Journal: Animals : an Open Access Journal from MDPI

Article Title: Probiotics: Symbiotic Relationship with the Animal Host

doi: 10.3390/ani12060719

Figure Lengend Snippet: Effects of probiotics on ruminant production.

Article Snippet: Lactobacillus plantarum (DSMV 8862) and L. plantarum (DSMZ 8866) , Single dose at weaning or suckling of 5 × 10 9 CFU/mL or 5 × 10 10 CFU/mL , Oral administration , Piglets (25 and 28 days, respectively) , Improves body weight and feed conversion ratio , [ ] .

Techniques: Probiotics, Cell Counting, Concentration Assay

Journal: Animals : an Open Access Journal from MDPI

Article Title: Probiotics: Symbiotic Relationship with the Animal Host

doi: 10.3390/ani12060719

Figure Lengend Snippet: Effects of probiotics on swine production.

Article Snippet: Lactobacillus plantarum (DSMV 8862) and L. plantarum (DSMZ 8866) , Single dose at weaning or suckling of 5 × 10 9 CFU/mL or 5 × 10 10 CFU/mL , Oral administration , Piglets (25 and 28 days, respectively) , Improves body weight and feed conversion ratio , [ ] .

Techniques: Probiotics, Cell Counting, Concentration Assay, Clinical Proteomics, Colorimetric Assay, Shear